ASMS 2018

66th ASMS Conference on Mass Spectrometry and Allied Topics
San Diego, California
June 3-7 2018

Booth 221

Sunday June 3 - Thursday June 7

Poster ThP 451

10:30-2:30PM Thursday June 7

Proposed Utility of and Optimized HDF5 File Architecture for Efficent Size and Speed LCMS Data Acquisition, Archival and Access

Poster ThP 714

10:30-2:30PM Thursday June 7

Collect Your Own Proteome: Demonstrating the Feasability of Personal Proteome Data Collection and Analysis

Work Shop 02

5:45-7:00PM Wednesday June 6

Using R for Mass Spectrometry Data Analysis and Workflows


This workshop will focus on the various ways that R can be used for mass spectrometry data processing and analysis. An overview of several R packages for mass spectrometry data access and analysis will be shown, along with example workflows going from raw MS data all the way to data analysis and final analysis reports. Time will also be given for questions and input from the participants. The goal of the workshop is to provide a foundation for anyone to access and analyze their own mass spectrometry data and help broaden analysis possibilities beyond canned routines in existing software packages.

Workshop Outline

Time Topic
5:45 - 5:50 Introduction & Overview
5:50 - 6:00 Converting Vendor Data Formats to Open Standards
6:00 - 6:10 R Packages for Mass Spectrometry Analysis
6:10 - 6:25 The Tidyverse & Shiny
6:25 - 6:40 End-to-End Analysis Workflows
6:40 - 7:00 Questions & Discussion